rs32598561 SNP Detail

Summary

• ID
  rs32598561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86235259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC AGGCTCCCTG ATGTCCTTCG
  R
  AAAGCATTGA AGTAGACTTG GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
ss45168267	mCV22889913	ABI	CRAMUS_MOUSE	f	SNP	A	A			G		G
ss49436581	NES12847845	PERLEGEN	MM_PANEL2	f	SNP			A	A		G	G	G
ss144875392	ENSMUSSNP2413961	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
rs32598561					SNP	A	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436581	NES12847845	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86235259 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	232 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	482 bp proximal
Tssr7739	transcription start site region 7739	735 bp downstream
Tssr7740	transcription start site region 7740	1018 bp upstream
Tssr12766	transcription start site region 12766	857 bp downstream