rs32598725 SNP Detail

Summary

• ID
  rs32598725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85705978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA GTGGAAAAGG GAAGGAATTT
  K
  GGGGAGGTCA ATTTAGATAT TCAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46165742	mCV24067731	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss145398704	ENSMUSSNP948196	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss322752778	CHEV_8_87503248	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32598725					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85705978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	303 bp distal
Cpgi20739	CpG island 20739	455 bp proximal
Junb	jun B proto-oncogene	601 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	1127 bp downstream
Rr401033	regulatory region 401033	390 bp downstream
Rr401034	regulatory region 401034	529 bp upstream
Tssr78492	transcription start site region 78492	1551 bp downstream
Tssr78493	transcription start site region 78493	1442 bp downstream
Tssr78494	transcription start site region 78494	1323 bp downstream
Tssr78495	transcription start site region 78495	1178 bp downstream
Tssr78496	transcription start site region 78496	744 bp downstream
Tssr78497	transcription start site region 78497	720 bp downstream
Tssr78498	transcription start site region 78498	362 bp downstream
Tssr78499	transcription start site region 78499	838 bp upstream
Tssr78500	transcription start site region 78500	854 bp upstream
Tssr78501	transcription start site region 78501	1002 bp upstream
Tssr82216	transcription start site region 82216	1799 bp upstream
Tssr82217	transcription start site region 82217	1461 bp upstream
Tssr82218	transcription start site region 82218	1349 bp upstream
Tssr82219	transcription start site region 82219	1324 bp upstream
Tssr82220	transcription start site region 82220	1269 bp upstream
Tssr82221	transcription start site region 82221	1233 bp upstream
Tssr82222	transcription start site region 82222	1206 bp upstream
Tssr82223	transcription start site region 82223	886 bp upstream
Tssr82224	transcription start site region 82224	809 bp upstream
Tssr82225	transcription start site region 82225	625 bp upstream
Tssr82226	transcription start site region 82226	1648 bp downstream
Tssr82227	transcription start site region 82227	1705 bp downstream