rs32600096 SNP Detail

Summary

• ID
  rs32600096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178165595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCGAGGC GAGGCCCGCT
  AGAGCGGCTG CGCGCGCAGG CCCCGCCCCG CCCCCACTGC GCGACCTCCG CGCTGGGCCG
  GACCGCGCAA ATGGAGGCTC TTAGAAGCCA CCTTTCGGTT AAACGGACCC GCCGCAGTGG
  CCGCCGGCCT TTCCGGCTCT TGAGCCGCCG CGCTCCACCG GCGCTCTGCC TTCTGTGTCC
  Y
  GGCGGAGGCT CTCCTCCACC CGCCTTCAGT CCTCACCTGG CATTTTCCAC TCGAGAACAA
  CCTCCTTTCT TCCATCTTAG TTTAGTTTTT TGGTTTTCGG GTTGTTTTTT TTGTTGTTGT
  TTCTTGGGTT TTTTTTTTTT TGTTTTGGTT TTTGTTTTTT TTTTTGTCCC TCCGGCTCTA
  GGTTTAAAAA ACTCTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45168528	mCV22831348	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32600096					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178165595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Gm38300	predicted gene, 38300	1571 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	233 bp upstream
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	943 bp upstream
Tssr317	transcription start site region 317	439 bp upstream
Tssr318	transcription start site region 318	214 bp upstream
Tssr10385	transcription start site region 10385	1893 bp downstream
Tssr10386	transcription start site region 10386	1816 bp downstream
Tssr10387	transcription start site region 10387	852 bp downstream
Tssr10388	transcription start site region 10388	714 bp downstream
Tssr10389	transcription start site region 10389	128 bp downstream
Tssr10390	transcription start site region 10390	43 bp downstream
Tssr10391	transcription start site region 10391	164 bp upstream
Tssr15481	transcription start site region 15481	1937 bp upstream
Tssr15482	transcription start site region 15482	1866 bp upstream
Tssr15483	transcription start site region 15483	1622 bp upstream
Tssr15484	transcription start site region 15484	912 bp upstream
Tssr15485	transcription start site region 15485	858 bp upstream
Tssr15486	transcription start site region 15486	777 bp upstream
Tssr15487	transcription start site region 15487	711 bp upstream
Tssr15488	transcription start site region 15488	378 bp upstream
Tssr15489	transcription start site region 15489	336 bp upstream
Tssr15490	transcription start site region 15490	297 bp upstream
Tssr15491	transcription start site region 15491	269 bp upstream
Tssr15492	transcription start site region 15492	236 bp upstream