rs32600109 SNP Detail

Summary

• ID
  rs32600109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170796694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT CTTCATCCTT ACCTCTCCTC
  Y
  ACTTCCTCAG GCTCTGGGCA TTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45168731	mCV24426915	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146149197	ENSMUSSNP2015368	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320115074	CHEV_1_172899256	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32600109					SNP	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170796694 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	738 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	758 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	694 bp distal
Rr25626	regulatory region 25626	1409 bp proximal
Rr372438	regulatory region 372438	129 bp downstream
Tssr14958	transcription start site region 14958	900 bp upstream