rs32600144 SNP Detail

Summary

• ID
  rs32600144
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149417426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAACACA CAGCACTCGT
  GCTTCACAGT GCCCACTTGC TGACTTAGGC CAAGATACAA AGGAGAATGG GTCTCCTGGG
  GCCCAGGGAC ACAACCACAG TCTCTAATCA CACCAGCAAC AACAGAACAC AAACCAAAAC
  CATCAAGTAA ACCAATGTCC ATGAATTTGC TTACGTGAAG ACTCCACCTT CCAATGCTGC
  M
  GTTCCCTCTC CGGCCTGTGA GACTGCACGT GAGATTCAGA GGAGGAGCAG GATGGCAGGG
  TCCCCCTCTG CTCCCCAGTG TGAGAGCAAG GGGCCAGCGA CAGGGCCTGC AGGAGCTTCT
  GTTTCACTGT GAGGCCTCTG CCGAGTCTGC TGCTCATCTT GTGACCTTGT GAGCAGGATC
  TACACTGACA CCTACACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45719243	mCV24954439	ABI	CRAMUS_MOUSE	f	SNP		A	C					C	C
ss46702683	NES10938096	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		C	C	C	C	C	C	C	C
ss148031448	ENSMUSSNP1495953	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32600144					SNP	A	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702683	NES10938096	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149417426 () rs orientation: forward

Symbol	Name	Function Class
Tssr40324	transcription start site region 40324	1681 bp upstream
Ube4b	ubiquitination factor E4B	within coordinates
Ube4bos2	ubiquitination factor E4B, opposite strand 2	1670 bp upstream
Ube4bos3	ubiquitination factor E4B, opposite strand 3	1670 bp upstream