rs32600152 SNP Detail

Summary

• ID
  rs32600152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149417599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGAAGACT CCACCTTCCA
  ATGCTGCCGT TCCCTCTCCG GCCTGTGAGA CTGCACGTGA GATTCAGAGG AGGAGCAGGA
  TGGCAGGGTC CCCCTCTGCT CCCCAGTGTG AGAGCAAGGG GCCAGCGACA GGGCCTGCAG
  GAGCTTCTGT TTCACTGTGA GGCCTCTGCC GAGTCTGCTG CTCATCTTGT GACCTTGTGA
  R
  CAGGATCTAC ACTGACACCT ACACAGACTC ATCTCTTTCC AGCAGTGGGG GAAACTCCTT
  AATCCATCTG CCTTCTTTTT AATGAGCGAC AATCTCAGTA TGGAGCCCTG GTTGGCTTGG
  AACGTTTTAT GTAGACCAGG CTGGCACTGA ATTCAAAAGT CTGCCTGTCC CTTTCCCCCG
  AGCACTGCAT TTTAAAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45716098	mCV24954451	ABI	CRAMUS_MOUSE	f	SNP		A						G		G
ss46702692	NES10938099	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	A
ss148031465	ENSMUSSNP2487910	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32600152					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702692	NES10938099	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149417599 () rs orientation: forward

Symbol	Name	Function Class
Tssr40324	transcription start site region 40324	1508 bp upstream
Ube4b	ubiquitination factor E4B	within coordinates
Ube4bos2	ubiquitination factor E4B, opposite strand 2	1497 bp upstream
Ube4bos3	ubiquitination factor E4B, opposite strand 3	1497 bp upstream