rs32600385 SNP Detail

Summary

• ID
  rs32600385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4297099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGGGAT TAGGAGTGAA
  GGGAGTAGAT GTGGAGGTCC GAGCATGTGA ATCAGGGACG AGACGGACAG GCGTGAATGC
  AGGGGAGGCC AGAGTATTGG GATGCGACGC GACTTACTCC CAACATGCCC CTGAGCATGC
  TTTAGCTCAC CTAGAGCTGA CCAGCTCCAA CCCAACCTGT GGCCTGGACT GGGCCAGGTG
  Y
  CTGTCCCATT GTCCTGCAGT TTCGAGGACA GAGTGGGGTA TGTTTCCTTT TTGTTGGTGA
  TGCATGCAGT TCAAGTGGAC AAGAGAACAA TATAACAAAA CAAAAAAATT TACAACCACA
  AATCCCAGCA CCAAAGTTGA GAAACCTTGC TGGAAGTAGC TGATGCAACC ATACGTAGGC
  TTAGGTGACA CTGTGGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46166496	mCV23274346	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss61075440	NES16047350	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		T	C	C	C	C	C	C	T	C
ss148556196	ENSMUSSNP1192248	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32600385					SNP	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075440	NES16047350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4297099 () rs orientation: forward

Symbol	Name	Function Class
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	90 bp downstream
Map2k7	mitogen-activated protein kinase kinase 7	within coordinates
Tgfbr3l	transforming growth factor, beta receptor III-like	1115 bp upstream
Tssr76110	transcription start site region 76110	1089 bp upstream
Tssr76111	transcription start site region 76111	1124 bp upstream
Tssr76112	transcription start site region 76112	1149 bp upstream