rs32600660 SNP Detail

Summary

• ID
  rs32600660
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84444080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA AATGCCCAGA AAAGGCTAGT
  S
  TGCAGACGCT TCTTGGCAGA GTAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46165774	mCV23003961	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss145360682	ENSMUSSNP3030930	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
ss322745607	CHEV_8_86241350	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32600660					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84444080 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			1503 bp distal
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr666292	regulatory region 666292			1893 bp distal
Rr666293	regulatory region 666293			1128 bp distal
Rr666294	regulatory region 666294			330 bp distal
Tssr78288	transcription start site region 78288			1927 bp downstream