rs32601410 SNP Detail

Summary

• ID
  rs32601410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34612215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTTAACTG CTGAGCCATC TCTCCAGCCC ATAAAATTAC
  CGATGCATTT ATTTATACAA GATCCAATTC CTTTCAAGTA CTCACATATG AAAAAACAAG
  Y
  CCTGTAGAAG TGTTTGGGGA ATGGAGATAC CCTAGGGTCA TATTTCCATG CATTCGATAC
  TCAGTATTTA AAAGACGTTC AAAGCCATCT GCATGTGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46166314	mCV22853965	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss149094922	ENSMUSSNP6909816	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322575451	CHEV_8_35208115	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32601410					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34612215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	1230 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661962	regulatory region 661962	within coordinates
Rr661963	regulatory region 661963	776 bp proximal
Rr661964	regulatory region 661964	1962 bp proximal
Tssr76861	transcription start site region 76861	183 bp upstream
Tssr76862	transcription start site region 76862	1264 bp upstream
Tssr76863	transcription start site region 76863	1299 bp upstream
Tssr76864	transcription start site region 76864	1314 bp upstream
Tssr80896	transcription start site region 80896	1086 bp downstream
Tssr80897	transcription start site region 80897	1520 bp downstream
Tssr80898	transcription start site region 80898	1656 bp downstream
Tssr80899	transcription start site region 80899	1671 bp downstream
Tssr80900	transcription start site region 80900	1692 bp downstream
Tssr80901	transcription start site region 80901	1713 bp downstream
Tssr80902	transcription start site region 80902	1913 bp downstream
Tssr80903	transcription start site region 80903	1957 bp downstream