rs32601443 SNP Detail

Summary

• ID
  rs32601443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85122746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTACTCA AGCTGCAGAA GTCTACTGGC TTCCTTTACA
  CCAGGCAGTA GAGGGGGGGG GGGCGGGAGG GGAACTGTAT TTCTAGGAAC CCAATCCAGG
  Y
  CCTGTTGATT CTTTCCACAT TCTCCGTAAT TACTCTCCTC TTGGCGGCTC ATCACTTTGA
  TCCACACATG CAGGTGTGGC CTGCATCTGA GACTCTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45668458	mCV22285891	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146897476	ENSMUSSNP4017475	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32601443					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85122746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	571 bp proximal
Rr594659	regulatory region 594659	379 bp proximal
Rr594660	regulatory region 594660	1037 bp proximal
Rr594661	regulatory region 594661	1152 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	917 bp upstream
Tssr37705	transcription start site region 37705	611 bp upstream
Tssr37706	transcription start site region 37706	627 bp upstream
Tssr37707	transcription start site region 37707	642 bp upstream
Tssr37708	transcription start site region 37708	700 bp upstream
Tssr37709	transcription start site region 37709	908 bp upstream
Tssr37710	transcription start site region 37710	994 bp upstream
Tssr37711	transcription start site region 37711	1009 bp upstream
Tssr37712	transcription start site region 37712	1166 bp upstream