rs32604410 SNP Detail

Summary

• ID
  rs32604410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44215019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGGACA GGGTTTCCCT
  AATTGACCCA GGTGGGCCTT AAACTTACTC TGAGGTCTGT CTACTGTGCT GCAATCCTCC
  TGCCTCAGAC TCCCAAGTAG CTGAAATTAC AAGTTTGAGC CACCACACTC AGCCATGGTA
  AACACTCTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTTGG
  R
  AGTCAACTGG AAGGGACCCA TGGTTCCTCA AGAATCAACC ATCTGAGGGC TTTGTTTGCT
  TTTGATAGAG TCTCTCCTTG CCCTGGAGCT CACTGAGTAG GCTGACCAGT GAGCTCCGAG
  GAGACTCCTG TCTCTACTTC CCAACAGGAT CACAAACATT CATGGGCCTT TTTACAAGAT
  GGGGTCTCTC TGGCTGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47687442	NES11335453	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	A	G	G		A	G	G		G
ss136393643	ENSMUSSNP1131496	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss322940619	CHEV_9_44111805	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32604410					SNP	G	G	A	G	A	G	A	G	A	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687442	NES11335453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44215019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	1499 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr206299	regulatory region 206299	581 bp proximal
Rr368726	regulatory region 368726	1961 bp upstream
Tssr89139	transcription start site region 89139	1873 bp downstream