rs32604624 SNP Detail

Summary

• ID
  rs32604624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84444688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCTCTGC CTCCCAAGTC CTGGGATTTA AAGGAGTGCA
  CTACCACTGC CTGGTGTTAG AGCTGATTGT GTGAGCATGT TTGTGGCTCC TGAATTGTGT
  R
  CTTTGGTTGG TGAATTGTAT ATCATATGAT TGTTTCAGTA AAGCTGTTCC AATTTTAAAG
  AAACAAACAA AAGGTCACTT CACCTTGGGA CCAACCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46166355	mCV23003964	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145360697	ENSMUSSNP5914493	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322745609	CHEV_8_86241958	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32604624					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84444688 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr666293	regulatory region 666293			1736 bp distal
Rr666294	regulatory region 666294			938 bp distal