rs32605386 SNP Detail

Summary

• ID
  rs32605386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44217704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCTCTAC CAACAGACAC
  ACACACACCA GCCCCGGAGT CTACTTTTTT TTTTTTTCTT TTTTCTTTTT TTTTTTTTTT
  TTTTGGTTTT TTCGAGACAG GGTTTCTCTG TGTAGCCCTG GCTGTCCTGG AACTCAGAAA
  TCTGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCG TGCACCACCA CGCCCGGCCG
  R
  AGTCTACTTT CTTTAACACG TGATCATCCA TATTCCTCTA TCTTCACTTC CATTCTGTTC
  GACGAATGAC ACCCATTCCA GAACTCCACA CTCATTTAAC ATGCCCCAGT GCTTAATTTC
  TCTACAAGAC ATCCTTCACA GAGCCCAGCA AAGTGATCTT TAACAAAACC AGACTCGATC
  AAGTCAGAAT TCTGTGTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47687452	NES11335272	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32605386					SNP	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687452	NES11335272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44217704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	333 bp distal
Hinfp	histone H4 transcription factor	736 bp upstream
Rr195005	regulatory region 195005	1297 bp proximal
Rr206299	regulatory region 206299	103 bp distal
Rr368726	regulatory region 368726	312 bp downstream
Tssr89139	transcription start site region 89139	719 bp upstream