rs32605742 SNP Detail

Summary

• ID
  rs32605742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79888259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGAGCA ATTATCTTCG
  CATGTTGACT GCACACAGTA TATGTGCCCA CGTGTGTATT CTTTAACTTG GGCATGTTCC
  TCTGTGTGCT TTCTCACACC AGTGCTGAGG CCCAGGTTGG GTCCCTCATT TTACATAAAG
  CTACACTGGA CAACAAGATC CTCTGCTGAT GGAAGCCAGA GGAACCTGGC CGCTGTCCAT
  Y
  ATATGACCCT GGGATGTGGA GGCTAAGGCT GCTACAGAGA TGGAAAAGGG AACTGAAACA
  CTATTTTGCT AGTTTCTGGT TTGATTTCAA TTATGTCATT TCCTGCTGGG AGCTAGGGAG
  GGAGGAGGGA GGGAGGAGGG AGGGAGGGAG GGAGGGAGGG AGGGAGGGAG GGAGGGAGGG
  AAGAGGGAGG GAGAGTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47188442	NES11213709	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs32605742					SNP	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47188442	NES11213709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79888259 () rs orientation: forward

Symbol	Name	Function Class
Gm60940	predicted gene, 60940	within coordinates
Rr403376	regulatory region 403376	695 bp downstream
Rr468704	regulatory region 468704	997 bp distal