rs32608549 SNP Detail

Summary

• ID
  rs32608549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172304338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAA ACAGCTCTCG AAGCCTTTAT
  Y
  CCCCTGAGTG GTTCGAGGAT TAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45169062	mCV23005038	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss120011361	PARCsnp_1.19759	PARC_SEQ	INBRED	f	SNP			T	C
ss120014421	PARCsnp_1.09790	PARC_SEQ	INBRED	f	SNP			T	C
ss146193226	ENSMUSSNP4912461	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320125601	CHEV_1_174406902	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32608549					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172304338 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	1957 bp downstream
Gm70809	predicted gene, 70809	1798 bp downstream
Gm70813	predicted gene, 70813	1791 bp downstream
Gm70814	predicted gene, 70814	1140 bp upstream
Rr423578	regulatory region 423578	1403 bp distal
Slamf9	SLAM family member 9	Intron
Tssr10198	transcription start site region 10198	1387 bp downstream
Tssr10199	transcription start site region 10199	1359 bp downstream
Tssr10200	transcription start site region 10200	1337 bp downstream
Tssr15219	transcription start site region 15219	1571 bp upstream