rs32609328 SNP Detail

Summary

• ID
  rs32609328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36346317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAATTTG ATTCCGGGGA TACTAACTAC
  ATAATAGGAA CAGAGTTCGA GTTCAAGCTA ATAAGGCTTT CTGCTTTTAA ATCTCAAGTT
  TTAGCGTCAT CTTCTATAAC CCACACGGGT CCAAATGACT GTTCTCTCTA CTAATCTTGT
  Y
  CACATTCACC CTCAACTCGT TCACTTCCTC TTTGCACGGT CCATCTTGTG GCTTTCACTC
  AGTCTACATG ACATATGTAG ACATGGGCAT TTTGGGCATT AGGCCTGGAC CACAGACTTT
  CTAGATTGGC CTCTGGTAGG CTAACAGTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45168871	mCV27594580	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss319688335	CHEV_1_36364081	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32609328					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36346317 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	497 bp upstream
Cpgi139	CpG island 139	335 bp proximal
Gm70585	predicted gene, 70585	within coordinates
Rr366864	regulatory region 366864	674 bp upstream
Rr395991	regulatory region 395991	296 bp upstream
Rr409282	regulatory region 409282	1888 bp distal
Rr409283	regulatory region 409283	within coordinates
Rr409284	regulatory region 409284	378 bp proximal
Rr409285	regulatory region 409285	544 bp proximal
Tssr6253	transcription start site region 6253	491 bp upstream
Tssr6254	transcription start site region 6254	509 bp upstream
Tssr6255	transcription start site region 6255	538 bp upstream
Tssr6256	transcription start site region 6256	823 bp upstream
Tssr6257	transcription start site region 6257	901 bp upstream
Tssr6258	transcription start site region 6258	1031 bp upstream