rs32609469 SNP Detail

Summary

• ID
  rs32609469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35973645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACACAT GTATATACCA
  CTATAGGCGT GGGTCCTCAA CTGTTCCCAC ACATGTTTGG CCAGAACTCT CTGTCCCCAG
  GGAGTACTTA TGCTTGACCA TGTCTGAGGT GTACCTCAGA GCACCTTTCA TGGATGCATC
  CCTGGGTGGG CCCTAAGAGT GGACTGTGGG TAGATGACAC AGCTTCCCAC GATGACTTCC
  Y
  AAGTGAAGCT GATGGTGAGA ATAAGGAGGG CAGATGGAGA TAGGAGCATC CAGCGGGCCT
  CATATGTCAG TATTGGGTCC TGAGAAGTGG GGAGCCAGGG GTGTTAAAGG GGATGGGCAC
  AGGGACAGAG CCAGAGTCTG GGAAAGGACT CTAGACCTCC AGGGCTATGC TGGGCATGCA
  CTAACTTCGC TCTCCCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688571	NES10233400	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32609469					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688571	NES10233400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35973645 () rs orientation: forward

Symbol	Name	Function Class
Ablim2	actin-binding LIM protein 2	within coordinates
Rr610026	regulatory region 610026	1851 bp distal
Rr610027	regulatory region 610027	1219 bp distal
Tssr45961	transcription start site region 45961	1930 bp downstream
Tssr45962	transcription start site region 45962	1901 bp downstream
Tssr45963	transcription start site region 45963	1848 bp downstream
Tssr45964	transcription start site region 45964	1819 bp downstream