rs32609473 SNP Detail

Summary

• ID
  rs32609473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35973394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAATGGA TACCTATTCG
  GTATTTAGAA ATGACCTTTT TGCATTTTTA CCTACACATA CACACACACA CACACACACA
  CACACACACA CACACGGGGG GGGGGGCAAC CCACAGACTT ACCCGTGAAT ACATTACCTA
  GAGACACACA GAAAGGCACA GGCATACAGC ATGCCACATA CAAGCACACG TACACAGAGA
  Y
  ATCGGCATAT ATTGCATTCA GACAACACAT AGACACAGAC ACAGAGATGC AGGCACACAT
  GTATATACCA CTATAGGCGT GGGTCCTCAA CTGTTCCCAC ACATGTTTGG CCAGAACTCT
  CTGTCCCCAG GGAGTACTTA TGCTTGACCA TGTCTGAGGT GTACCTCAGA GCACCTTTCA
  TGGATGCATC CCTGGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688575	NES10233397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32609473					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688575	NES10233397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35973394 () rs orientation: forward

Symbol	Name	Function Class
Ablim2	actin-binding LIM protein 2	within coordinates
Tssr45961	transcription start site region 45961	1679 bp downstream
Tssr45962	transcription start site region 45962	1650 bp downstream
Tssr45963	transcription start site region 45963	1597 bp downstream
Tssr45964	transcription start site region 45964	1568 bp downstream