rs32609955 SNP Detail

Summary

• ID
  rs32609955
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44386093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTATCC CCTGCCAGCC
  ATGTGATCTC TCAGCACCCT GCAAACCCTC TCTCTGCAAA ATGACACTTG TATAGTGCTA
  TGCAGAAGAG CACATTGAGC AGTACATAGC CATTTTCTGT GAGTGCTCCC TGCTCCCAGC
  GCAATCCCAG GAAGGCTCCA GCCTTTAACA CAGGACTAAG GAGCAGCAGT TATGTTTCTA
  W
  GATGAGTACT GGTGGGACAA TCGGGCAGCA GGCCAAGAGA AGAGGAAAGT GGCTACAGCC
  TTTTCTGCAA CCCTGCCTCT GACAGCCTCT CTTAGGTTTA TCTTTAGGTT TAGCTGTACC
  GGAGATTAAA TTCAGAGCCC TGAACATGCT AGGCAGGCAC TCTACCTAGG ATCACACCAT
  CAGCTCTTCT CTTGGGCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688636	NES11326984	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	A	A	A	A	T	A	A	T	A
ss136396090	ENSMUSSNP5257502	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32609955					SNP	T	T	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688636	NES11326984	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44386093 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm22540	predicted gene, 22540	1615 bp downstream
Gm47204	predicted gene, 47204	1916 bp downstream
Rr195027	regulatory region 195027	1293 bp distal
Rr195028	regulatory region 195028	1108 bp proximal
Rr203856	regulatory region 203856	1343 bp distal
Rr203857	regulatory region 203857	1147 bp proximal
Rr209142	regulatory region 209142	within coordinates
Rr209143	regulatory region 209143	1508 bp proximal