rs32609959 SNP Detail

Summary

• ID
  rs32609959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44386145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCAAAAT GACACTTGTA
  TAGTGCTATG CAGAAGAGCA CATTGAGCAG TACATAGCCA TTTTCTGTGA GTGCTCCCTG
  CTCCCAGCGC AATCCCAGGA AGGCTCCAGC CTTTAACACA GGACTAAGGA GCAGCAGTTA
  TGTTTCTAAG ATGAGTACTG GTGGGACAAT CGGGCAGCAG GCCAAGAGAA GAGGAAAGTG
  R
  CTACAGCCTT TTCTGCAACC CTGCCTCTGA CAGCCTCTCT TAGGTTTATC TTTAGGTTTA
  GCTGTACCGG AGATTAAATT CAGAGCCCTG AACATGCTAG GCAGGCACTC TACCTAGGAT
  CACACCATCA GCTCTTCTCT TGGGCTTAAG AATGCCATAG TAAAGCTGGG CATTGGTGGT
  ACACAACTTC AAACCCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46317736	mCV25082825	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss47688640	NES11326987	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	A	G	G	A	G
ss136396093	ENSMUSSNP3400759	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32609959					SNP	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688640	NES11326987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44386145 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm22540	predicted gene, 22540	1563 bp downstream
Gm47204	predicted gene, 47204	1864 bp downstream
Rr195027	regulatory region 195027	1345 bp distal
Rr195028	regulatory region 195028	1056 bp proximal
Rr203856	regulatory region 203856	1395 bp distal
Rr203857	regulatory region 203857	1095 bp proximal
Rr209142	regulatory region 209142	within coordinates
Rr209143	regulatory region 209143	1456 bp proximal