rs32609963 SNP Detail

Summary

• ID
  rs32609963
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44386192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTACATAG CCATTTTCTG
  TGAGTGCTCC CTGCTCCCAG CGCAATCCCA GGAAGGCTCC AGCCTTTAAC ACAGGACTAA
  GGAGCAGCAG TTATGTTTCT AAGATGAGTA CTGGTGGGAC AATCGGGCAG CAGGCCAAGA
  GAAGAGGAAA GTGGCTACAG CCTTTTCTGC AACCCTGCCT CTGACAGCCT CTCTTAGGTT
  W
  ATCTTTAGGT TTAGCTGTAC CGGAGATTAA ATTCAGAGCC CTGAACATGC TAGGCAGGCA
  CTCTACCTAG GATCACACCA TCAGCTCTTC TCTTGGGCTT AAGAATGCCA TAGTAAAGCT
  GGGCATTGGT GGTACACAAC TTCAAACCCA GCACTCAGGA GGTAGAGGTA GGAGGATCTC
  TGAGTTCGAG GCCAGCCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688644	NES11326991	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32609963					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688644	NES11326991	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44386192 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm22540	predicted gene, 22540	1516 bp downstream
Gm47204	predicted gene, 47204	1817 bp downstream
Rr195027	regulatory region 195027	1392 bp distal
Rr195028	regulatory region 195028	1009 bp proximal
Rr203856	regulatory region 203856	1442 bp distal
Rr203857	regulatory region 203857	1048 bp proximal
Rr209142	regulatory region 209142	within coordinates
Rr209143	regulatory region 209143	1409 bp proximal