rs32610439 SNP Detail

Summary

• ID
  rs32610439
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAGAGA GGAAGAAGAG
  GGCTAGGGAT TTGGCTCAGT GGTAAAGTGT TGCCTAGCAC TGAGAGACTA GGTTCAGGTT
  CAGTCGCCAG CAATACAAAC AAGCCACTCT CAGAACTCTG AAAGGATGAG ATACCGGCCT
  TTCTAAACCC TTGGCTTTTG CTCCCCGCAG GCTTCTGCAA AGAGAGTCCC AGCCTTGCCA
  S
  GAGGCGGAAG TGACTGAGCT GCTAGATCCT TCAAAGTGGA GACATCCAGA AGACAGACAA
  CTTGGCCAGC GGGAAATGAA GGTGAAGAGA AACTGAGGAG ATTGGAATCT AGTGCTGAAT
  TTGCATTCGA TGCCGAGCCT AGGAGGTCAG AGAAGACCTA GGGCACAAAA GAGGAAGTAG
  CAAAGGGGAG GTTCTTCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688654	NES11326812	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32610439					SNP	C	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688654	NES11326812	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388822 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	915 bp proximal
Cpgi21660	CpG island 21660	1631 bp proximal
Gm10023	predicted gene 10023	399 bp downstream
Gm22540	predicted gene, 22540	1010 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	1222 bp distal
Rr203857	regulatory region 203857	1256 bp distal
Rr206312	regulatory region 206312	within coordinates
Rr209143	regulatory region 209143	422 bp distal