rs32610440 SNP Detail

Summary

• ID
  rs32610440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGATTTG GCTCAGTGGT
  AAAGTGTTGC CTAGCACTGA GAGACTAGGT TCAGGTTCAG TCGCCAGCAA TACAAACAAG
  CCACTCTCAG AACTCTGAAA GGATGAGATA CCGGCCTTTC TAAACCCTTG GCTTTTGCTC
  CCCGCAGGCT TCTGCAAAGA GAGTCCCAGC CTTGCCAGGA GGCGGAAGTG ACTGAGCTGC
  Y
  AGATCCTTCA AAGTGGAGAC ATCCAGAAGA CAGACAACTT GGCCAGCGGG AAATGAAGGT
  GAAGAGAAAC TGAGGAGATT GGAATCTAGT GCTGAATTTG CATTCGATGC CGAGCCTAGG
  AGGTCAGAGA AGACCTAGGG CACAAAAGAG GAAGTAGCAA AGGGGAGGTT CTTCCTTCTG
  ATCCCCTCTA TTAGGTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688656	NES11326814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32610440					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688656	NES11326814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388845 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	892 bp proximal
Cpgi21660	CpG island 21660	1608 bp proximal
Gm10023	predicted gene 10023	376 bp downstream
Gm22540	predicted gene, 22540	1033 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	1245 bp distal
Rr203857	regulatory region 203857	1279 bp distal
Rr206312	regulatory region 206312	within coordinates
Rr209143	regulatory region 209143	445 bp distal