rs32610679 SNP Detail

Summary

• ID
  rs32610679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35972408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGACTG GGAAATGTGT
  GTTCCTGGTG ATGGAGGGTA CTACTCCCTC TTCTTGTCCT CCGTCACTTC TGTCACTCCG
  TCACTCTGTC CTGTGTGGTC ACAGGAGGGG ACTAGCAGAG ATGGACAGGT GAGAGCAGAG
  GTGCTGTGTG GGTGATGAGG CAGAGCTCAC GCCTGGCTAC AAGGCTACAG CCCCTGAAGT
  R
  GCTGAAGTCG ACTTGTAGAG AGCTGCAGTT TGCCGGAGGA TTCATGAAGC ATGTCCTTTG
  GAACTGGCTA TAAGAGAGAG GTGTGGGAGG GGCTTGTCCC TGACAGTGCT CAGAGCCTAG
  TCCTTAGCTG CCACCCTATT CCCTCTCACT GCAAAGGTGG GGGTAAGCAT GGCATGGGGG
  TGTAACTTGT TTCCACTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688581	NES10233393	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32610679					SNP	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688581	NES10233393	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35972408 () rs orientation: forward

Symbol	Name	Function Class
Ablim2	actin-binding LIM protein 2	within coordinates
Rr610026	regulatory region 610026	614 bp distal
Rr610027	regulatory region 610027	within coordinates
Tssr45961	transcription start site region 45961	693 bp downstream
Tssr45962	transcription start site region 45962	664 bp downstream
Tssr45963	transcription start site region 45963	611 bp downstream
Tssr45964	transcription start site region 45964	582 bp downstream