rs32610681 SNP Detail

Summary

• ID
  rs32610681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:35972336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGCAGC CTCATGTGTG
  CTGGGACTGT GTCAGGCAGG CATGGTGCCA TCTTAAGCTG TTGGTGCCAA CAGCACTGAC
  TGGGAAATGT GTGTTCCTGG TGATGGAGGG TACTACTCCC TCTTCTTGTC CTCCGTCACT
  TCTGTCACTC CGTCACTCTG TCCTGTGTGG TCACAGGAGG GGACTAGCAG AGATGGACAG
  R
  TGAGAGCAGA GGTGCTGTGT GGGTGATGAG GCAGAGCTCA CGCCTGGCTA CAAGGCTACA
  GCCCCTGAAG TGGCTGAAGT CGACTTGTAG AGAGCTGCAG TTTGCCGGAG GATTCATGAA
  GCATGTCCTT TGGAACTGGC TATAAGAGAG AGGTGTGGGA GGGGCTTGTC CCTGACAGTG
  CTCAGAGCCT AGTCCTTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688583	NES10233392	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32610681					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688583	NES10233392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35972336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ablim2	actin-binding LIM protein 2			Intron
				Noncoding-Transcript-Variant
Rr610026	regulatory region 610026			542 bp distal
Rr610027	regulatory region 610027			within coordinates
Tssr45961	transcription start site region 45961			621 bp downstream
Tssr45962	transcription start site region 45962			592 bp downstream
Tssr45963	transcription start site region 45963			539 bp downstream
Tssr45964	transcription start site region 45964			510 bp downstream