rs32611367 SNP Detail

Summary

• ID
  rs32611367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATACCGG CCTTTCTAAA
  CCCTTGGCTT TTGCTCCCCG CAGGCTTCTG CAAAGAGAGT CCCAGCCTTG CCAGGAGGCG
  GAAGTGACTG AGCTGCTAGA TCCTTCAAAG TGGAGACATC CAGAAGACAG ACAACTTGGC
  CAGCGGGAAA TGAAGGTGAA GAGAAACTGA GGAGATTGGA ATCTAGTGCT GAATTTGCAT
  Y
  CGATGCCGAG CCTAGGAGGT CAGAGAAGAC CTAGGGCACA AAAGAGGAAG TAGCAAAGGG
  GAGGTTCTTC CTTCTGATCC CCTCTATTAG GTGGAGGACC TCGGAGGAGA GACCTCCGCC
  TTCTGCTCTG TAGCGCTGCA CTTGAGTGCC ATAAGGCGAA CCCTACCGTG CAGATCTGGA
  AACGGCTGAA ACCGCCCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688666	NES11326823	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	C	T	T	C	T
ss136396153	ENSMUSSNP880428	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32611367					SNP	C	C	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688666	NES11326823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388949 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	788 bp proximal
Cpgi21660	CpG island 21660	1504 bp proximal
Gm10023	predicted gene 10023	272 bp downstream
Gm22540	predicted gene, 22540	1137 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	1349 bp distal
Rr203857	regulatory region 203857	1383 bp distal
Rr206312	regulatory region 206312	within coordinates
Rr209143	regulatory region 209143	549 bp distal