rs32611397 SNP Detail

Summary

• ID
  rs32611397
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35971618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGAGAG TAAGGCAAGC
  ACATGACCTC ATCTGTAGCA TGAGCATCCT TATTGTGTGT CTCTGGGCCA AGTGCTGTGA
  AACACTCTGT CTAAATAGTG TGCTGGTGCA CTCTGTCTTG ACCTTGCAAA GGGGCTGTCC
  TAGCTGACAG GACTTGGACA GTTCTGGTTT TCCTCTACAT CCTACAGTGG AGGAGAAAGG
  S
  CTTCCCTGGG AGTTGCATGC TTTTGGTTTT GCCTTCTCTG GGGGCGAGTG TGCTGCAGTG
  GTGGTTAGCG GAGGTGGCGC AACTGAGTTG TCGTTCTGCG GGCTCTGCAC AGCTCTGAGC
  ATCCTCCTGG CGGGTGTGAG GTGGGAGCGG CGGGTGGAGA CAGCCAGCTC TGCAGAAGGG
  AGCCTCGCTG CAGCAGCACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688591	NES10233388	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32611397					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688591	NES10233388	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35971618 () rs orientation: forward

Symbol	Name	Function Class
Ablim2	actin-binding LIM protein 2	within coordinates
Rr610026	regulatory region 610026	within coordinates
Rr610027	regulatory region 610027	177 bp proximal
Tssr45961	transcription start site region 45961	82 bp upstream
Tssr45962	transcription start site region 45962	101 bp upstream
Tssr45963	transcription start site region 45963	150 bp upstream
Tssr45964	transcription start site region 45964	181 bp upstream