rs32611400 SNP Detail

Summary

• ID
  rs32611400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35971532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGAGGC TTGTACTTGA
  CACGTCTTAT GTCCCAGCTC CGAGTTGCCC CAGGACGTCC TTGTGAGGCC ACTGGGGTCC
  CCATGTGTGA TGAGAGTAAG GCAAGCACAT GACCTCATCT GTAGCATGAG CATCCTTATT
  GTGTGTCTCT GGGCCAAGTG CTGTGAAACA CTCTGTCTAA ATAGTGTGCT GGTGCACTCT
  R
  TCTTGACCTT GCAAAGGGGC TGTCCTAGCT GACAGGACTT GGACAGTTCT GGTTTTCCTC
  TACATCCTAC AGTGGAGGAG AAAGGCCTTC CCTGGGAGTT GCATGCTTTT GGTTTTGCCT
  TCTCTGGGGG CGAGTGTGCT GCAGTGGTGG TTAGCGGAGG TGGCGCAACT GAGTTGTCGT
  TCTGCGGGCT CTGCACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688595	NES10233386	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32611400					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688595	NES10233386	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35971532 () rs orientation: forward

Symbol	Name	Function Class
Ablim2	actin-binding LIM protein 2	within coordinates
Rr610026	regulatory region 610026	27 bp proximal
Rr610027	regulatory region 610027	263 bp proximal
Tssr45961	transcription start site region 45961	168 bp upstream
Tssr45962	transcription start site region 45962	187 bp upstream
Tssr45963	transcription start site region 45963	236 bp upstream
Tssr45964	transcription start site region 45964	267 bp upstream