rs32613257 SNP Detail

Summary

• ID
  rs32613257
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179179897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACTGCTG AACTAGCAAT
  TATTAATTAT CCATTAATAT GTGCCAGACG CAGTTCTGGG CATATTGCCA TATTTTAATT
  CAATATTTCT GAATTGGACC TTATCATTTT TTTTGTTTGT TTCAAATGAA GAAAAAGACA
  AACTAGGTAA TTGCCCAGTT CAAACAGGCT ACAATTCTAA CTCTGTCCTT CCTTCCAGCC
  W
  CAAGTATCTC CATGGAGTTC CTGCTTCTGC AGGTGCTCTG CCTGACGCAC TATCAACACT
  AGAGTCCATT TCTCTGTCCA CTGCGATATA TTAACCTCTC CTATCCAGCA CACGTCTGGA
  CCAGGTGGCA AAACCTGGCC CTTTAACAGA ATCAGGCCAG CATGTGCCAA GTCATGCATT
  CTGCAACTCT CCAAGTATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46705541	NES10677907	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32613257					SNP	T	A	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46705541	NES10677907	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179179897 () rs orientation: forward

Symbol	Name	Function Class
Gm71070	predicted gene, 71070	474 bp upstream
Smyd3	SET and MYND domain containing 3	within coordinates