rs32613271 SNP Detail

Summary

• ID
  rs32613271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171975958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAACCCCGC CGGAAAGCGT GACGGCGCAG GCGCAGGCGC GGAGACCCGA GACGGTGGTG
  GTGGCTGCCG CTGGCCAGTG TAAGATGGCG GCGGCGTTGG TGGCGGCAGT GGACGGGGCG
  GCTGGGCCTG GAACAGTCGG AGCATCCGCT GGCAGAAGGA TGACCCTAGA TGGGAAGCGG
  GCTGCCGGGC CTCGCCAGCT CCCGTGCTTG TAACTGCCCC AGCCGGACGC CCTCCCCTTG
  ACCTACCGGG TCCGTGTTTC GTCCGGCTCG GCCTGTTCCC CCCTCTCCCT GACCGCTTCC
  M
  GCAGGACAGG CCCGATCCCT TTCCTAAAAC TCCCGGACTT TAAGTCTTAC TCCCCTCCTC
  CGAGTCGGTG CTGGGAGGAC TCGTCCTCTG CCTGGGTCGG TCCACGGGGT TGCCCCCTAG
  GGCCAACCCC ATGACTCACA GGGGCTTCTC GTTCGTCCGG TGACCCATTC GTAAACTCTC
  ATTTCTCCCT TTATAATTTG GGGACCCGGC TCTGTTGGCG TCTCCTAGTC ACTTCAGGGC
  CACCGCGCAG TGTGCCCCCT TCCCCCATCC CAAGATCTCA GGCCCAGCAC CTCGTACGGA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45169939	mCV23114267	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32613271					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171975958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			within coordinates
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm70088	predicted gene, 70088			404 bp upstream
Rr372457	regulatory region 372457			within coordinates
Rr423469	regulatory region 423469			415 bp distal
Rr423470	regulatory region 423470			203 bp distal
Rr423471	regulatory region 423471			within coordinates
Rr423472	regulatory region 423472			1575 bp proximal
Tssr10170	transcription start site region 10170			343 bp downstream
Tssr10171	transcription start site region 10171			297 bp downstream
Tssr10172	transcription start site region 10172			288 bp downstream
Tssr10173	transcription start site region 10173			215 bp downstream
Tssr15148	transcription start site region 15148			426 bp upstream