rs32613514 SNP Detail

Summary

• ID
  rs32613514
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105284140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACG TCGGAAGCAT CCCGGGGGTC
  M
  GCACTGCCCG CTGCGCTCTG CTAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45170785	mCV25150514	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss145082631	ENSMUSSNP1799763	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss319882712	CHEV_1_107252992	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32613514					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105284140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	within coordinates
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	within coordinates
Rr416387	regulatory region 416387	398 bp distal
Rr416388	regulatory region 416388	within coordinates
Rr416389	regulatory region 416389	367 bp distal
Rr416390	regulatory region 416390	144 bp proximal
Rr416391	regulatory region 416391	245 bp proximal
Rr416392	regulatory region 416392	328 bp proximal
Tssr8255	transcription start site region 8255	302 bp upstream
Tssr8256	transcription start site region 8256	354 bp upstream
Tssr8257	transcription start site region 8257	431 bp upstream
Tssr8258	transcription start site region 8258	644 bp upstream
Tssr13126	transcription start site region 13126	65 bp downstream
Tssr13127	transcription start site region 13127	225 bp downstream
Tssr13128	transcription start site region 13128	243 bp downstream
Tssr13129	transcription start site region 13129	354 bp downstream
Tssr13130	transcription start site region 13130	519 bp downstream