rs32613790 SNP Detail

Summary

• ID
  rs32613790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44436141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCGTGGG AGCACACTCC
  CCTGTAGAAC AGTTAGGTTT TCAAAGGACT CAGGCAAGAG GACTATGAGT TTGAAGCAGA
  TTTAGGCTAC ACAGAGACTC TGTTTCAAAC AAACAAGCCA ACAAACAACC CCACCCCCCA
  AATTTTTTCA AGACAACAGA AAGCATTGAG CCAAGCCTGA GGTCCTTTTA TTTGCAGAAT
  Y
  CCCATGAGTG CCCAAGTGAT GCCAGCTGAG CAGGTTCAGC AAGCCCAGCG ACATAGTGGG
  AAGAATGATA AAGCAGACCA CAGATCCTGG CGAGCTGGGA GAGTCGGGGG GAAACACCTC
  AAGGTGTGAT TAGGGCAGGA GAGCTGATAG GACTCTGGGT TTGGAGTTCA TAGAGAATAA
  GGCCATGATG AAGGTTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47688798	NES11324721	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32613790					SNP	T	C	C	C	C	C	T	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688798	NES11324721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44436141 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200337	regulatory region 200337	1541 bp distal
Rr203858	regulatory region 203858	within coordinates
Rr206318	regulatory region 206318	859 bp proximal
Rr401337	regulatory region 401337	1646 bp upstream
Tssr89167	transcription start site region 89167	1124 bp downstream
Tssr89168	transcription start site region 89168	1553 bp downstream
Tssr89169	transcription start site region 89169	1580 bp downstream
Tssr89170	transcription start site region 89170	1625 bp downstream
Tssr89171	transcription start site region 89171	1660 bp downstream