rs32614718 SNP Detail

Summary

• ID
  rs32614718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44436423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC TAACAATATC CTTTGGTAGT
  Y
  CAATAGCAGC CAAGTCAAGT GAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47688806	NES11324737	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C			C	T	C	C		C
ss136396591	ENSMUSSNP2771949	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
ss322941033	CHEV_9_44333209	CHEVERUD	SCREENING_POP	f	SNP							T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32614718					SNP	C	C	T	C	C	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688806	NES11324737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44436423 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200337	regulatory region 200337	1823 bp distal
Rr203858	regulatory region 203858	208 bp distal
Rr206318	regulatory region 206318	577 bp proximal
Rr401337	regulatory region 401337	1364 bp upstream
Tssr89167	transcription start site region 89167	842 bp downstream
Tssr89168	transcription start site region 89168	1271 bp downstream
Tssr89169	transcription start site region 89169	1298 bp downstream
Tssr89170	transcription start site region 89170	1343 bp downstream
Tssr89171	transcription start site region 89171	1378 bp downstream