rs32614723 SNP Detail

Summary

• ID
  rs32614723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44437329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGACAGCC AATGCTTGCT TCACAGAGAA GCTCAGTCTC
  AAAAAAAAAA AAAAAAAAAA GCAGCAAACA AAAATACCCC TTCCAAATGA CTTTGCCATT
  Y
  TAACTCAGGG AGACAAGATA AACTTCTCTG TTAAAGAAGC AAGAGGCAGA GCTGGGTCCT
  CAGTCACACA GCAGGAGATG CCAAACCTGA TCCTGTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47688812	NES11324609	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T	C	T	T	T		C	T	C	C		C
ss136396627	ENSMUSSNP1574982	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss322941041	CHEV_9_44334115	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32614723					SNP	C	C	T	C	T	T	T	C	T	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688812	NES11324609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44437329 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr203858	regulatory region 203858	1114 bp distal
Rr206318	regulatory region 206318	128 bp distal
Rr401337	regulatory region 401337	458 bp upstream
Tssr89167	transcription start site region 89167	60 bp upstream
Tssr89168	transcription start site region 89168	365 bp downstream
Tssr89169	transcription start site region 89169	392 bp downstream
Tssr89170	transcription start site region 89170	437 bp downstream
Tssr89171	transcription start site region 89171	472 bp downstream