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rs32615325 SNP Detail
Summary
  • ID
    rs32615325
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:44437354 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAGCGGCA GCGCACACGT
    TTAATCTCAG TACTTGGCAG GTAGTAGGTG AGTTTGAACC TGGTCTACAG AGTTCCAGGA
    CAGCCAATGC TTGCTTCACA GAGAAGCTCA GTCTCAAAAA AAAAAAAAAA AAAAAGCAGC
    AAACAAAAAT ACCCCTTCCA AATGACTTTG CCATTCTAAC TCAGGGAGAC AAGATAAACT
    Y
    CTCTGTTAAA GAAGCAAGAG GCAGAGCTGG GTCCTCAGTC ACACAGCAGG AGATGCCAAA
    CCTGATCCTG TGTCTCCCAC CTCCCTTTGG CATCTATTAA GGGCAACAGA TATGGGAGAC
    AATAAGAGTC TAAAAGTGGA TGTATTTGCC TATGTTCTAT AATCCTTGCG GCGGGATTCC
    CAAGCTATCC CCTCTTCCTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
ss47688814 NES11324610 PERLEGEN MM_PANEL2 f SNP C T T T T T C T T T C T C
ss136396630 ENSMUSSNP302433 ENSEMBL ENSEMBL_Sanger f SNP C T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
rs32615325 SNP C C T T T T T C T T T C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47688814 NES11324610 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:44437354 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cxcr5 C-X-C motif chemokine receptor 5 within coordinates
Rr203858 regulatory region 203858 1139 bp distal
Rr206318 regulatory region 206318 153 bp distal
Rr401337 regulatory region 401337 433 bp upstream
Tssr89167 transcription start site region 89167 85 bp upstream
Tssr89168 transcription start site region 89168 340 bp downstream
Tssr89169 transcription start site region 89169 367 bp downstream
Tssr89170 transcription start site region 89170 412 bp downstream
Tssr89171 transcription start site region 89171 447 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory