rs32615327 SNP Detail

Summary

• ID
  rs32615327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44437523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATTCTAA CTCAGGGAGA
  CAAGATAAAC TTCTCTGTTA AAGAAGCAAG AGGCAGAGCT GGGTCCTCAG TCACACAGCA
  GGAGATGCCA AACCTGATCC TGTGTCTCCC ACCTCCCTTT GGCATCTATT AAGGGCAACA
  GATATGGGAG ACAATAAGAG TCTAAAAGTG GATGTATTTG CCTATGTTCT ATAATCCTTG
  Y
  GGCGGGATTC CCAAGCTATC CCCTCTTCCT TGACATAGTA TATTTAAAGT TCCAAGCAGG
  ACCAGAGCAG CAGGGAGCCA CATGACTTGA CTCACCAGGT CATCCATATT GTATGTGATG
  GAGCCCATGT CCAGGGTTAG TGGGTAGTTC ATAGCTGCAG CTCTGCGTCA CCAGGCTGGT
  CACTGTCTGA TGTCGAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47688816	NES11324611	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32615327					SNP	T	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688816	NES11324611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44437523 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200338	regulatory region 200338	1877 bp proximal
Rr203858	regulatory region 203858	1308 bp distal
Rr206318	regulatory region 206318	322 bp distal
Rr401337	regulatory region 401337	264 bp upstream
Tssr89167	transcription start site region 89167	254 bp upstream
Tssr89168	transcription start site region 89168	171 bp downstream
Tssr89169	transcription start site region 89169	198 bp downstream
Tssr89170	transcription start site region 89170	243 bp downstream
Tssr89171	transcription start site region 89171	278 bp downstream