rs32615330 SNP Detail

Summary

• ID
  rs32615330
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44438830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGG GAGGATATTT CCTGACTTAG
  K
  CCATGATAGT GTAAGATTGT ACCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47688820	NES11324506	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	G		T	T	T		G
ss136396645	ENSMUSSNP2474245	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss322941048	CHEV_9_44335616	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32615330					SNP	T	T	G	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688820	NES11324506	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44438830 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1089 bp upstream
Rr200338	regulatory region 200338	570 bp proximal
Rr206318	regulatory region 206318	1629 bp distal
Rr401337	regulatory region 401337	742 bp downstream
Tssr89167	transcription start site region 89167	1561 bp upstream
Tssr89168	transcription start site region 89168	1110 bp upstream
Tssr89169	transcription start site region 89169	1093 bp upstream
Tssr89170	transcription start site region 89170	1032 bp upstream
Tssr89171	transcription start site region 89171	1018 bp upstream