rs32615332 SNP Detail

Summary

• ID
  rs32615332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44439218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC TCCAGCTCTT CTGGTCCTGT
  R
  CTGCTCAGGG ATACACTGCC TCGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47688822	NES11324467	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A	G	A		A	A	G		G
ss136396672	ENSMUSSNP3374947	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322941052	CHEV_9_44336004	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32615332					SNP	A	A	A	G	A	A	A	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688822	NES11324467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44439218 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1477 bp upstream
Rr200338	regulatory region 200338	182 bp proximal
Rr401337	regulatory region 401337	1130 bp downstream
Tssr89167	transcription start site region 89167	1949 bp upstream
Tssr89168	transcription start site region 89168	1498 bp upstream
Tssr89169	transcription start site region 89169	1481 bp upstream
Tssr89170	transcription start site region 89170	1420 bp upstream
Tssr89171	transcription start site region 89171	1406 bp upstream