rs32615404 SNP Detail

Summary

• ID
  rs32615404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAGAGT CCCACTGGCT
  TCCTAGAGGC AACGGAAAGT TACTCAAGCA AGCCCAGAAG AGATGCCACT CTGTTTCCAA
  GGCAGGCTAT CTCTTAATTC CACCCCCTAC TTTCGCTTTC CTGGTCCACC GCTCACACAC
  AAAGGAAGCC TCTTGGGCCT GGCTCGCTGC CTCTTTTCTG AGGGTTCCAA CACTTGCCCA
  Y
  GCTGCCCGAT TTCATTCTCC TCTTCGTAAA GATTTAACTT CACTATTGTT AATTATGTGT
  GTGTGCTCGA ATGTGGGGAT ATGTATGTGA ATGAAGGTGC CTGTGGAGAC CAGGGCATCA
  GATCCGGTGG AGCTGGAGTT CCAGACAATT GACAGGGGTG TTGGGAGCTG AACTCTGTCC
  ACCACAAGGA TTCTAACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689080	NES11321790	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	C	C	T	T	C	T
ss136397267	ENSMUSSNP3450945	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32615404					SNP	C	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689080	NES11321790	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477022 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	222 bp distal
Rr206319	regulatory region 206319	within coordinates
Tssr89174	transcription start site region 89174	1989 bp downstream