rs32615406 SNP Detail

Summary

• ID
  rs32615406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTATTGTT AATTATGTGT
  GTGTGCTCGA ATGTGGGGAT ATGTATGTGA ATGAAGGTGC CTGTGGAGAC CAGGGCATCA
  GATCCGGTGG AGCTGGAGTT CCAGACAATT GACAGGGGTG TTGGGAGCTG AACTCTGTCC
  ACCACAAGGA TTCTAACAAC TGAGCCATCT CTTCAGCTCC TCCCCTTTAA CTTCTAACAC
  Y
  CACCTGTGTC CAGTCCAGAC AGTCACCAGA TAGATCCATT CAGAGTCAAG TTTGGTGATC
  TGTGCCTGTG ATCCCCACGT TTGGGATGTG AAAGTAGAAG AGTTACAAGT TTGAGGGCTA
  ACCTGGGTTA CATAGTGAAG CACACTGTCT TGGAAGATCC AGGGCAAGGG AGGAGGCTCA
  GTGGCATAGC CTTTGTCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689082	NES11321739	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32615406					SNP	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689082	NES11321739	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477263 () rs orientation: forward

Symbol	Name	Function Class
Tssr2844	transcription start site region 2844	1819 bp downstream
Tssr89174	transcription start site region 89174	1748 bp downstream
Tssr89175	transcription start site region 89175	1797 bp downstream