rs32615409 SNP Detail

Summary

• ID
  rs32615409
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTGTGC CTGTGATCCC
  CACGTTTGGG ATGTGAAAGT AGAAGAGTTA CAAGTTTGAG GGCTAACCTG GGTTACATAG
  TGAAGCACAC TGTCTTGGAA GATCCAGGGC AAGGGAGGAG GCTCAGTGGC ATAGCCTTTG
  TCTAGCACGT GGGAAGTCCA GAGGGTTCAG TCCCACACAA AGCTAAACAA AAAGGCTGCA
  W
  TGTCTCAATG GACTGTAACA GCCCATCCAT ACAGACTCCC ATCCCATCCC ATCCAAAGCC
  CGTGTTCCTG GCTCTGCCTG AGGCTATCAG CATGTTTCTC TGAAAATACC TAGGAAACAA
  CTGCCGTGTA TAGTAACCTT ATATAAATTA AATGAGTGTT GATCCAACGG ACAAATTTTA
  GATGCAAAGG AAGAGCTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689086	NES11321706	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32615409					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689086	NES11321706	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477519 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	719 bp distal
Rr206319	regulatory region 206319	318 bp distal
Tssr2844	transcription start site region 2844	1563 bp downstream
Tssr89174	transcription start site region 89174	1492 bp downstream
Tssr89175	transcription start site region 89175	1541 bp downstream
Tssr89176	transcription start site region 89176	1887 bp downstream