rs32615412 SNP Detail

Summary

• ID
  rs32615412
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGCAACT TCAGGTGGTG
  ATCTGTTTAC CACCAGGAAA CTCAAATATC ACACTGTCTG TATAACGCTA GGCGTTCATT
  GGCGTTAGCA AGGAGCCTTG GCTGAAGGTT GCACACCTTT GTAACGCTCT TGCAGAGCAA
  ATGGGAAGAG AGGAGACGAG AAAAGTGATG TCAAACACCA CTGTGAAATT AGAAACTGAC
  M
  AAAAAAAATG TCAATTTACA AAAATAACAT CAATTCCAAC AGTCAAACTA GAGAGCAAAC
  TTTACCAAGC CACTGGGCCT CTCTGTGAAG CAATGGGTAC AGGGTACACT ACTGCTGGAA
  CTGAGGGGCA GTTGAACGTG TTCTTAGCGA GTCACCTGCT GACCGTGCAA ATGAAAAATA
  TCTCCTTTGA CTCTGGGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689090	NES11321690	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32615412					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689090	NES11321690	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477920 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	1120 bp distal
Rr206319	regulatory region 206319	719 bp distal
Tssr2844	transcription start site region 2844	1162 bp downstream
Tssr89174	transcription start site region 89174	1091 bp downstream
Tssr89175	transcription start site region 89175	1140 bp downstream
Tssr89176	transcription start site region 89176	1486 bp downstream