rs32616106 SNP Detail

Summary

• ID
  rs32616106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135660262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGGCTCT GCTCTCAACG TCATTCCAGA
  CAAAGAGCGG ATTCAATTTG ATCATAACTT AATTATAAGG TTTCTTGTAC TCATTTAGAA
  ATACTTAAGG AAGTCTAGGG CTGGATGTGG CCCAGCTGTA GAGTCTGCAT TTAGTCATGG
  R
  TCCCTGTTTC CATCTGCACA CATGGTAATC AGATTTCTGA ACTCCAAAGG TAGAGAGCTG
  GGGATGGGGA GTGGGGGTTC TGGAGGTGGG GGGTGGGAGA GCAAGATCTT AGTTACAGTC
  AAGTTCTGGG GGACATGGGA CCTGGAGTAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45170822	mCV23623440	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		A
ss60803911	NES16474349	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		G		G		G	G	A	G		G
ss319992774	CHEV_1_137629101	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32616106					SNP	A	A	G	G	G	G	G	G	A	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803911	NES16474349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135660262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419256	regulatory region 419256			1531 bp distal
Rr419257	regulatory region 419257			within coordinates
Rr419258	regulatory region 419258			1511 bp proximal