rs32616225 SNP Detail

Summary

• ID
  rs32616225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44478505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAGGACAG TCAGGACTAT GTAGAAAGAC CCCATCCTAA
  TTAATTAATT AAAAAGTTGA AGGAAGGGAA ATTCTCTGAA TATTTAGTGT GTTAAAGTTA
  Y
  ACTTTTGCTT TTGTTCTTCT GGTGACAAGC GCGTGCCAGG CCATAATTGT ATTGCGACTT
  CTCTTGTATT TGTTTAAAAT TGTTTATGGT AACGATTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47689094	NES11321621	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	T	C		C	C	T	C		C
ss136397302	ENSMUSSNP51865	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss322941147	CHEV_9_44375291	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32616225					SNP	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689094	NES11321621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44478505 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	1705 bp distal
Rr206319	regulatory region 206319	1304 bp distal
Tssr2844	transcription start site region 2844	577 bp downstream
Tssr89174	transcription start site region 89174	506 bp downstream
Tssr89175	transcription start site region 89175	555 bp downstream
Tssr89176	transcription start site region 89176	901 bp downstream