rs32616227 SNP Detail

Summary

• ID
  rs32616227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44478536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACTAG GGAGACCAAG
  GCAGGTGGAT CTCTATGAGT TCAAGGCCAA CCTAGTCTAT GTAGTAAGTT TCAGGACAGT
  CAGGACTATG TAGAAAGACC CCATCCTAAT TAATTAATTA AAAAGTTGAA GGAAGGGAAA
  TTCTCTGAAT ATTTAGTGTG TTAAAGTTAT ACTTTTGCTT TTGTTCTTCT GGTGACAAGC
  R
  CGTGCCAGGC CATAATTGTA TTGCGACTTC TCTTGTATTT GTTTAAAATT GTTTATGGTA
  ACGATTCTTT CTTTTTCTAT TTCTTCTTAG ATCCTCACAT ATCTGGGTAA AAGTCCCTAC
  AAGGGAAAAT ACAGATGTTT ACACCCTTAC CCAAATTCCT TCAGGGACAT GGGGACCCAG
  GCTGGGATGC CATTCAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689096	NES11321622	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	A	A	G	G	A	G
ss136397305	ENSMUSSNP1367346	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32616227					SNP	A	A	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689096	NES11321622	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44478536 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	1736 bp distal
Rr206319	regulatory region 206319	1335 bp distal
Tssr2844	transcription start site region 2844	546 bp downstream
Tssr89174	transcription start site region 89174	475 bp downstream
Tssr89175	transcription start site region 89175	524 bp downstream
Tssr89176	transcription start site region 89176	870 bp downstream