rs32618786 SNP Detail

Summary

• ID
  rs32618786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35887068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACCAACA GGGAGCATTC
  TGGGAGAAGA AAGGGTCCAG TCTCCTTCTC TGCTCACAAG TACCACAACC TTGAGCCAAG
  CCTGGGAGGG TTGGAGGGGA CACACACTTT ACCTTTCCAC AGGCTGTAGC CTGACCTGAG
  AATGTCCCTG TGGCCCAGAT TCAGGCCCGT CTCCTGTTCT TAGGCCCTTG CTGTGTCCAC
  Y
  GTGAAAGATG GAGCAGTTCT GCTTCCCACA CTCACTAGGT GCTGTGGATA CCTCCCGCCT
  GTCTCCATCT GTGAGGAGTT CTGGAGGTAT AGGTGCATTG TGATCTCTCT CTCTCTCTTT
  CTCCCTCTCT CTCTCCCTCT CTCCCTCTCT CTCTCCTTCT CCCCAGAGAA TGCAGGCCCC
  CCCAGATGCT AACCTTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689593	NES10236395	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32618786					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689593	NES10236395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35887068 () rs orientation: forward

Symbol	Name	Function Class
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	1312 bp downstream
Tssr50711	transcription start site region 50711	708 bp upstream
Tssr50712	transcription start site region 50712	685 bp upstream
Tssr50713	transcription start site region 50713	646 bp upstream
Tssr50714	transcription start site region 50714	629 bp upstream
Tssr50715	transcription start site region 50715	438 bp upstream
Tssr50716	transcription start site region 50716	412 bp upstream