rs32618790 SNP Detail

Summary

• ID
  rs32618790
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35886056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTTCATCA TTTGGGGCCC AGTGGCTTTT GAATTCTATG
  TTGCCACTCA ATTCCCATGA TCTGGTTGAG ACCTCAAGGA CACATTTGCA AAGAGTCAGT
  K
  TGAAGGCCAG GTCCGAAGTC ACAATTAGCA GTCGGTCTCA TCTGAGCAAT CTCGGCCAGT
  TTAGCAGAGC CCCGGGGTGC TGAGTGCCAG TCTCCAACAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689597	NES10236393	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32618790					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689597	NES10236393	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35886056 () rs orientation: forward

Symbol	Name	Function Class
Rr609994	regulatory region 609994	1068 bp distal
Rr609995	regulatory region 609995	within coordinates
Rr609996	regulatory region 609996	554 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	300 bp downstream
Tssr50711	transcription start site region 50711	295 bp downstream
Tssr50712	transcription start site region 50712	310 bp downstream
Tssr50713	transcription start site region 50713	336 bp downstream
Tssr50714	transcription start site region 50714	376 bp downstream
Tssr50715	transcription start site region 50715	548 bp downstream
Tssr50716	transcription start site region 50716	578 bp downstream