rs32619058 SNP Detail

Summary

• ID
  rs32619058
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72886929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTAGTA TACCTTACCT
  TTTGCAGTCA CTGCTGGCTC TTTCCAACTT GTAGTATTGC CTAGGAGGGG GACCCGTGGT
  GCCCTCTATA CTGTATGGAC TCCTCTGTAC TGAGGGGTCC ATTGGGAACT ATGTGCCTTG
  AATCGTATCT ATTAAGAACT ATCCCATTTG GGGACAGGGA CTGCAAAATG TGTTGAAAAA
  M
  CCTCTATGCA CTCACCCAGA TTTTTTTTTG GTTTGTTTTT GGGACCAGAT TTTGCTGGGT
  AACCATGGCT GTCCTGGAAT TCACTCTTTA GACCAGGTTG GTCTCTAACT CACAGAGATC
  CACCTGCCTC TGCCTCTCAA GTGCTTGGAT TAAAGGCATG TGCCAGCATC TCCTGGCTTC
  ACGTAGTTTT TTATTAGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45171889	mCV23053082	ABI	CRAMUS_MOUSE	f	SNP	A	A	C				A	A
ss60750568	NES16381695	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A		A	A	A	A		A	A	C
ss144663565	ENSMUSSNP3432538	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32619058					SNP	A	A	C	A	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750568	NES16381695	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72886929 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	1309 bp upstream
Tssr7322	transcription start site region 7322	1338 bp upstream
Tssr7323	transcription start site region 7323	1381 bp upstream
Tssr7324	transcription start site region 7324	1430 bp upstream
Tssr7325	transcription start site region 7325	1445 bp upstream
Tssr7326	transcription start site region 7326	1475 bp upstream
Tssr7327	transcription start site region 7327	1504 bp upstream
Tssr7328	transcription start site region 7328	1807 bp upstream
Tssr7329	transcription start site region 7329	1842 bp upstream
Tssr7330	transcription start site region 7330	1856 bp upstream
Tssr12178	transcription start site region 12178	1345 bp downstream
Tssr12179	transcription start site region 12179	1388 bp downstream
Tssr12180	transcription start site region 12180	1452 bp downstream
Tssr12181	transcription start site region 12181	1473 bp downstream
Tssr12182	transcription start site region 12182	1516 bp downstream
Tssr12183	transcription start site region 12183	1537 bp downstream