rs32619593 SNP Detail

Summary

• ID
  rs32619593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35885399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACACAG AAGCAGGGGC
  CATTCAGGGA CAAGCAGGGG CTGGAAGAAG TGGAAGAGAC CCTGCCTTGG CAACTCTGGA
  GGCAGCACCC TTGTCTCTGA CTTCTGGCTT TCAAACCCTA AGAGAACAAG TGTGTCGTAG
  TTTGTTATGG CAGCCATGAA ACACAGTGAT ACCCTGAAGG CTTCTCTCAG GGAAAATGGG
  Y
  TTCACGTGAT TCTATGGACT AAAGAGACAG GCACTGTGCC TGACGCAAGA AGTTTCATGA
  AATCAACAAC GTGTCATATA AAGGCGGCAG CACTGTACAG CATCTTCCTC AGTCTTGACC
  TTTAACCTCA TCCCAGAGGG TGAGCCCTAT CCCACCCCTA TCACGGGTGT ACAACCCAAG
  GTTTGGGCCA GCCAGGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689611	NES10236384	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32619593					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689611	NES10236384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35885399 () rs orientation: forward

Symbol	Name	Function Class
Rr609994	regulatory region 609994	411 bp distal
Rr609995	regulatory region 609995	481 bp proximal
Rr609996	regulatory region 609996	1211 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	353 bp upstream
Tssr50711	transcription start site region 50711	952 bp downstream
Tssr50712	transcription start site region 50712	967 bp downstream
Tssr50713	transcription start site region 50713	993 bp downstream
Tssr50714	transcription start site region 50714	1033 bp downstream
Tssr50715	transcription start site region 50715	1205 bp downstream
Tssr50716	transcription start site region 50716	1235 bp downstream