rs32620270 SNP Detail

Summary

• ID
  rs32620270
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:15077888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCGC CGACTACGGG CGCATAAGGC
  S
  GTGCTGGCCG CACGCAGCGA CTACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46168925	mCV25113009	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss322517334	CHEV_8_15027888	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32620270					SNP	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15077888 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20129	CpG island 20129			within coordinates
Gm37844	predicted gene, 37844			within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr660168	regulatory region 660168			1557 bp distal
Rr660169	regulatory region 660169			463 bp distal
Rr660170	regulatory region 660170			287 bp proximal
Tssr76486	transcription start site region 76486			712 bp downstream
Tssr76487	transcription start site region 76487			682 bp downstream
Tssr76488	transcription start site region 76488			539 bp downstream
Tssr76489	transcription start site region 76489			501 bp downstream
Tssr76490	transcription start site region 76490			111 bp downstream
Tssr76491	transcription start site region 76491			70 bp upstream
Tssr76492	transcription start site region 76492			866 bp upstream
Tssr80488	transcription start site region 80488			225 bp upstream